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Life Sciences and Medicine

Current Events & History

Florida Spring Break 2021: February COVID-19 Data Forecasts the March of the Variants

It is widely believed that students and others spending their 2020 spring break in Florida helped spread COVID-19 far and wide, in the US and elsewhere (see also this study). The picture in 2021 is quite different in several ways. For one, the disease has been in the US for over a year, and an approximated 30% of the population has antibodies from prior exposure. Also, several vaccines are now in use, and close to 20% have received at least one inoculation at the time of this writing. (Since those two groups overlap, the total is believed to be in the ballpark of 45% of the total population.) We now know that children under the age of 16 do not get the disease in large numbers and are not a major vector for its spread. Social distancing practices are in use to varying degrees, and infection numbers are currently falling across the country. This is believed to be due to a combination of increased immunity and non-pharmacological interventions (NPIs) such as social distancing and mask use.
Announcements & Events

Crop Production Forecasts and Groundwater Trends Based on the Predator–Prey Model

Ever since Thomas Robert Malthus’s book An Essay on the Principle of Population, scientists have sought to determine the limit to the growth of human population due to finite resources. One such resource is groundwater. About 40% of global food production ultimately depends on irrigation and, increasingly, the source of irrigation water is groundwater aquifers. Groundwater irrigation allows farmers to increase crop yields, maintain them in dry spells and overcome temporal mismatches between growing seasons and seasonal rain. In many parts of the world, groundwater withdrawal (or pumping from wells) exceeds recharge, leading to groundwater depletion. In these regions, the “lifespan” of groundwater aquifers is limited, putting a bound on the amount of irrigation per year and the sustainability of groundwater-based agriculture. The goal of this study was to propose a dynamical systems framework capable of explaining past trends in groundwater-based irrigation and providing forecasts of food production.

Computation & Analysis

Distinguishing Risks of Modes of Cardiac Death in Heart Failure with Machine Learning

In medical fields like cardiology, the Wolfram Language continues to help researchers make discoveries and predictions. I recently coauthored a study that uses the machine learning functionality of the Wolfram Language to predict risks of deaths due to heart failure. In it, we aimed to build a classifier that is capable of distinguishing the probabilities of cardiac death caused by end-stage heart failure (HFD) and severe arrhythmic events/sudden death (ArE). What follows is a summary of the paper we published earlier this year.

Computation & Analysis

Accessing Monarch Biodiversity Data with New Wolfram Language Functions

Earth has experienced five major extinctions since life first appeared almost four billion years ago. The sixth is happening right now; the current extinction rate is between one hundred and one thousand times greater than what it was before 1800.

Despite the alarming extinction rate, it’s easier than ever to document biodiversity with the help of the Wolfram Language. Using the monarch butterfly as an example, I will explore the new biodiversity data access functions in the Wolfram Function Repository and how they can help you join a community of thousands of citizen scientists from iNaturalist in preserving biodiversity.

Announcements & Events

AI and the Wolfram Language Work toward Partial Automation in the Search for Cancer

NOTE: The following post contains real medical images.

As more technology is folded into medical environments all over the world, Wolfram’s European branch has taken on work with the United Kingdom’s National Health Service (NHS) in an effort to partially automate the process of cancer diagnosis. The task is to use machine learning to avoid checking thousands of similar-looking images of people’s insides by hand for signs of cancer.

Current Events & History

Tackling a Pandemic: A Computer-Based Maths Approach

How did the Department of Health and Social Care (DHSC) come up with their multi-phase response to tackle COVID-19? In this post, I investigate how the UK government's original plan against the coronavirus aligns with the four-step computational thinking process. Teachers are welcome to use this post as a free resource.

Please note: where possible, I have taken data from before the DHSC's plan was published.

The Computational Thinking Process

What is the computational thinking process? Simply put, it is a sequence of four steps that you can take in order to solve a problem. The aim is not just to obtain a solution, but to ensure that the right choices were made, the right tools were used and the right outcomes were achieved along the way. The steps are as follows: you define explicitly the problem you wish to solve, abstract it to a computational form, compute an answer, then interpret the result:

Best of Blog

Computational Explorations of the Coronavirus on Wolfram Community

When the world is in distress, Wolfram users turn to computation! Even in the midst of this global pandemic, Wolfram staff, friends and colleagues continue to show the power of computational curiosity. We’ve provided a centralized COVID-19 data and resources page, with ways to get free licenses for Wolfram technology through August, livestreamed multiparadigm explorations into the science and data behind the virus, computational explorations from Wolfram users and more. This resource will be continually updated, so make sure to check back often!

Our community of staff and users have been incredibly active, creating their own innovative resources and exploring available data from many different angles. Wolfram Community gathers talented and experienced data scientists, biologists, chemists, supply chain experts, epidemiologists, mathematicians, physicists and more. In recent weeks, we’ve seen a flurry of activity and exploration, a willingness to share ideas and information, and mutual encouragement from industry professionals and high-school students alike.
Best of Blog

Invasion of the Stink Bugs: 20 Years of Marmorated Mayhem in One Map

Who has not encountered a stink bug? Perhaps the better question is not if, but when. I remember well my first interactions with stink bugs—partly because of their pungent, cilantro-like odor, but also because in my native Catalan language they are called Bernat pudent ("stinky Bernat") and Bernat is my twin brother's name.

So when I encountered the stink bug again when visiting Champaign, Illinois, for the 2019 Wolfram Technology Conference, it brought up a lot of fond childhood memories. This time, however, two things had changed: the frequency of encounters with the stink bug seemed exponentially greater, and I now had the Wolfram Language to more fully (and computationally) satisfy my curiosity about this reviled insect and its growing impact on our ecosystem. So to get a better picture of the arrival and spread of this invasive bug across the US, I used available observation data and the Wolfram Language to make a map of sightings over the past two decades.

Announcements & Events

Fishackathon: Protecting Marine Life with AI and the Wolfram Language

Fishackathon

Every year, the U.S. Department of State sponsors a worldwide competition called Fishackathon. Its goal is to protect life in our waters by creating technological solutions to help solve problems related to fishing.

The first global competition was held in 2014 and has been growing massively every year. In 2018 the winning entry came from a five-person team from Boston, after competing against 45,000 people in 65 other cities spread across 5 continents. The participants comprised programmers, web and graphic designers, oceanographers and biologists, mathematicians, engineers and students who all worked tirelessly over the course of two days.

To find out more about the winning entry for Fishackathon in 2018 and how the Wolfram Language has helped make the seas safer, we sat down with Michael Sollami to learn more about him and his team’s solution to that year’s challenge.